projects
Selected research and software projects in statistical genomics, spatial transcriptomics, and biomedical data science.
featured
IsoVita: Isoform Trajectories
Manuscript in preparation
An interpretable statistical framework for finding gradual and abrupt changes in transcript isoform usage across the human lifespan.
Cross-Donor Generalization
Manuscript in preparation
Testing how evaluation design changes estimates of cell-type classifier performance on unseen donors.
Homozygous Deletion Detection
QSURE 2026 · Research follow-up
Finding small, rare deletions in sparse single-cell DNA data by pooling evidence across cells.
SpotSweeper-py: Spatial QC
Published · F1000Research 2026
Open-source Python tools for detecting local quality-control outliers in spatial omics data.
Isoform Markers of Brain Aging
Conference poster · Biology of Genomes 2026
Using transcript isoform patterns to study brain aging and compare markers across brain regions.
Visium HD Analysis Workflows
Research software
Reusable Python workflows for quality control, artifact correction, and tissue-aligned visualization of high-resolution spatial transcriptomics.